Package: phase1PRMD 1.0.2

phase1PRMD: Personalized Repeated Measurement Design for Phase I Clinical Trials

Implements Bayesian phase I repeated measurement design that accounts for multidimensional toxicity endpoints and longitudinal efficacy measure from multiple treatment cycles. The package provides flags to fit a variety of model-based phase I design, including 1 stage models with or without individualized dose modification, 3-stage models with or without individualized dose modification, etc. Functions are provided to recommend dosage selection based on the data collected in the available patient cohorts and to simulate trial characteristics given design parameters. Yin, Jun, et al. (2017) <doi:10.1002/sim.7134>.

Authors:Lu Zhang, Jun Yin

phase1PRMD_1.0.2.tar.gz
phase1PRMD_1.0.2.zip(r-4.7)phase1PRMD_1.0.2.zip(r-4.6)phase1PRMD_1.0.2.zip(r-4.5)
phase1PRMD_1.0.2.tgz(r-4.6-any)phase1PRMD_1.0.2.tgz(r-4.5-any)
phase1PRMD_1.0.2.tar.gz(r-4.7-any)phase1PRMD_1.0.2.tar.gz(r-4.6-any)
phase1PRMD_1.0.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html
DESCRIPTION |NEWS
card.svg |card.png
phase1PRMD/json (API)

# Install 'phase1PRMD' in R:
install.packages('phase1PRMD', repos = c('https://luzhangstat.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/luzhangstat/phase1prmd/issues

Uses libs:
  • jags– Just Another Gibbs Sampler for Bayesian MCMC
  • c++– GNU Standard C++ Library v3
Datasets:
  • eff - Efficacy response generation parameters
  • patlist_sim - A list of patient information
  • prob - Toxicity probability matrix

On CRAN:

Conda:

jagscpp

2.74 score 11 scripts 271 downloads 7 exports 64 dependencies

Last updated from:a7422ac922. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK161
source / vignettesOK186
linux-release-x86_64OK166
macos-release-arm64OK142
macos-oldrel-arm64OK172
windows-develOK104
windows-releaseOK116
windows-oldrelOK106
wasm-releaseOK150

Exports:eff_suggesteff_summarynTTP_summarynTTP.arraypatlist.displayRunPRMDSimPRMD

Dependencies:arrayhelpersbase64encbslibcachemclicodacpp11digestdplyrevaluatefarverfastmapfontawesomefsgenericsggplot2gluegridExtragtablehighrhtmltoolsisobandjquerylibjsonlitekableExtraknitrlabelinglatticelifecyclemagrittrMASSmemoisemimepillarpkgconfigplyrR6rappdirsRColorBrewerRcppreshape2rjagsrlangrmarkdownrstudioapiS7sassscalesstringistringrsvglitesvUnitsystemfontstextshapingtibbletidyselecttinytexutf8vctrsviridisLitewithrxfunxml2yaml