Package: phase1PRMD 1.0.2

phase1PRMD: Personalized Repeated Measurement Design for Phase I Clinical Trials

Implements Bayesian phase I repeated measurement design that accounts for multidimensional toxicity endpoints and longitudinal efficacy measure from multiple treatment cycles. The package provides flags to fit a variety of model-based phase I design, including 1 stage models with or without individualized dose modification, 3-stage models with or without individualized dose modification, etc. Functions are provided to recommend dosage selection based on the data collected in the available patient cohorts and to simulate trial characteristics given design parameters. Yin, Jun, et al. (2017) <doi:10.1002/sim.7134>.

Authors:Lu Zhang, Jun Yin

phase1PRMD_1.0.2.tar.gz
phase1PRMD_1.0.2.zip(r-4.5)phase1PRMD_1.0.2.zip(r-4.4)phase1PRMD_1.0.2.zip(r-4.3)
phase1PRMD_1.0.2.tgz(r-4.5-any)phase1PRMD_1.0.2.tgz(r-4.4-any)phase1PRMD_1.0.2.tgz(r-4.3-any)
phase1PRMD_1.0.2.tar.gz(r-4.5-noble)phase1PRMD_1.0.2.tar.gz(r-4.4-noble)
phase1PRMD_1.0.2.tgz(r-4.4-emscripten)phase1PRMD_1.0.2.tgz(r-4.3-emscripten)
phase1PRMD.pdf |phase1PRMD.html
phase1PRMD/json (API)
NEWS

# Install 'phase1PRMD' in R:
install.packages('phase1PRMD', repos = c('https://luzhangstat.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/luzhangstat/phase1prmd/issues

Uses libs:
  • jags– Just Another Gibbs Sampler for Bayesian MCMC
  • c++– GNU Standard C++ Library v3
Datasets:
  • eff - Efficacy response generation parameters
  • patlist_sim - A list of patient information
  • prob - Toxicity probability matrix

On CRAN:

Conda:

jagscpp

2.74 score 11 scripts 182 downloads 7 exports 68 dependencies

Last updated 5 years agofrom:a7422ac922. Checks:4 OK, 5 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 26 2025
R-4.5-winOKMar 26 2025
R-4.5-macOKMar 26 2025
R-4.5-linuxOKMar 26 2025
R-4.4-winNOTEMar 26 2025
R-4.4-macNOTEMar 26 2025
R-4.4-linuxNOTEMar 26 2025
R-4.3-winNOTEMar 26 2025
R-4.3-macNOTEMar 26 2025

Exports:eff_suggesteff_summarynTTP_summarynTTP.arraypatlist.displayRunPRMDSimPRMD

Dependencies:arrayhelpersbase64encbslibcachemclicodacolorspacecpp11digestdplyrevaluatefansifarverfastmapfontawesomefsgenericsggplot2gluegridExtragtablehighrhtmltoolsisobandjquerylibjsonlitekableExtraknitrlabelinglatticelifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmepillarpkgconfigplyrR6rappdirsRColorBrewerRcppreshape2rjagsrlangrmarkdownrstudioapisassscalesstringistringrsvglitesvUnitsystemfontstibbletidyselecttinytexutf8vctrsviridisLitewithrxfunxml2yaml