Package: phase1PRMD 1.0.2

phase1PRMD: Personalized Repeated Measurement Design for Phase I Clinical Trials

Implements Bayesian phase I repeated measurement design that accounts for multidimensional toxicity endpoints and longitudinal efficacy measure from multiple treatment cycles. The package provides flags to fit a variety of model-based phase I design, including 1 stage models with or without individualized dose modification, 3-stage models with or without individualized dose modification, etc. Functions are provided to recommend dosage selection based on the data collected in the available patient cohorts and to simulate trial characteristics given design parameters. Yin, Jun, et al. (2017) <doi:10.1002/sim.7134>.

Authors:Lu Zhang, Jun Yin

phase1PRMD_1.0.2.tar.gz
phase1PRMD_1.0.2.zip(r-4.5)phase1PRMD_1.0.2.zip(r-4.4)phase1PRMD_1.0.2.zip(r-4.3)
phase1PRMD_1.0.2.tgz(r-4.4-any)phase1PRMD_1.0.2.tgz(r-4.3-any)
phase1PRMD_1.0.2.tar.gz(r-4.5-noble)phase1PRMD_1.0.2.tar.gz(r-4.4-noble)
phase1PRMD_1.0.2.tgz(r-4.4-emscripten)phase1PRMD_1.0.2.tgz(r-4.3-emscripten)
phase1PRMD.pdf |phase1PRMD.html
phase1PRMD/json (API)
NEWS

# Install 'phase1PRMD' in R:
install.packages('phase1PRMD', repos = c('https://luzhangstat.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/luzhangstat/phase1prmd/issues

Uses libs:
  • jags– Just Another Gibbs Sampler for Bayesian MCMC
  • c++– GNU Standard C++ Library v3
Datasets:
  • eff - Efficacy response generation parameters
  • patlist_sim - A list of patient information
  • prob - Toxicity probability matrix

On CRAN:

7 exports 0.63 score 68 dependencies 11 scripts 210 downloads

Last updated 5 years agofrom:a7422ac922. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKAug 26 2024
R-4.5-winNOTEAug 26 2024
R-4.5-linuxNOTEAug 26 2024
R-4.4-winNOTEAug 26 2024
R-4.4-macNOTEAug 26 2024
R-4.3-winNOTEAug 26 2024
R-4.3-macNOTEAug 26 2024

Exports:eff_suggesteff_summarynTTP_summarynTTP.arraypatlist.displayRunPRMDSimPRMD

Dependencies:arrayhelpersbase64encbslibcachemclicodacolorspacecpp11digestdplyrevaluatefansifarverfastmapfontawesomefsgenericsggplot2gluegridExtragtablehighrhtmltoolsisobandjquerylibjsonlitekableExtraknitrlabelinglatticelifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmepillarpkgconfigplyrR6rappdirsRColorBrewerRcppreshape2rjagsrlangrmarkdownrstudioapisassscalesstringistringrsvglitesvUnitsystemfontstibbletidyselecttinytexutf8vctrsviridisLitewithrxfunxml2yaml